Output Catalog
ASAP is committed to accelerating the pace of discovery and informing a path to a cure for Parkinson’s disease through collaboration, research-enabling resources, and data sharing. We’ve created this catalog to showcase the research outputs and tools developed by ASAP-funded programs.
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Output Type
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Program
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CRN Team Name
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Theme
Mitochondrial Proteostasis Cryo-ET Analysis
Collection of scripts used for the analysis of cryo-ET data in Ehses et al., 2026. The code, written in MATLAB 2019b, includes pipelines for tomogram pre-processing and reconstruction as well as particle quantification.
Web portal (shiney ap) for analysis of total proteomes in response to nutrient stress
Web portal (shiney app) for analysis of total proteomes in response to nutrient stress Associated with preprint: https://doi.org/10.1101/2022.12.06.519342
Code for analysis of ER-phagy in iNeurons via proteomics
Code for analysis of ER-phagy in iNeurons via proteomics. Associated with preprint: https://doi.org/10.1101/2023.06.26.546565
Scripts for analysis of total proteomes in response to nutrient stress
Scripts for analysis of total proteomes in response to nutrient stress. Associated with preprint: https://doi.org/10.1101/2022.12.06.519342
Code for extraction of any user-defined information from uniprot
Code for extraction of any user-defined information from Uniprot.
Macros and pipelines for analysis of image analysis
ImageJ macros and pipelines for analysis of pUb puncta, Keima Ratio, p62nuclei and Parkin recruitment to mitochondria.
UniProtExtractR
UniProtKB is a publicly accessible database of annotated protein features for numerous organisms; however, globally extracting protein entry information for data visualization and categorization can be challenging. While the UniProtKB entry syntax…
