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TX2P – Transcript to protein

By Emil Gustavsson, David Murphy
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Output Details

Description
TX2P allows for automated integration of mass spectometry data in long-read RNA-sequencing workflow. It does so by predicting open reading frames for each transcripts within an input GTF/GFF file, translates it into peptide sequences and then searches for those predicted proteins in mass spec datasets using MetaMorpheus.
Tags
  • Long-read sequencing
  • Mass Spectrometry
  • Workflow
Discovery Team
Team Wood
Program
Collaborative Research Network
Theme
PD Functional Genomics

Meet the Authors

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    Emil Gustavsson

    External Collaborator

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    David Murphy

    External Collaborator

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Aligning Science Across Parkinson's
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