The IPDGC/GP2 Hackathon – an open science event for training in data science, genomics, and collaboration using Parkinson’s disease data

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Published May 20, 2022

Open science and collaboration are necessary to facilitate the advancement of Parkinson’s disease (PD) research. Hackathons are collaborative events that bring together people with different skill sets and backgrounds to generate resources and creative solutions to problems. These events can be used as training and networking opportunities, thus we coordinated a virtual 3-day hackathon event, during which 49 early-career scientists from 12 countries built tools and pipelines with a focus on PD. Resources were created with the goal of helping scientists accelerate their own research by having access to the necessary code and tools. Each team was allocated one of nine different projects, each with a different goal. These included developing post-genome-wide association studies (GWAS) analysis pipelines, downstream analysis of genetic variation pipelines, and various visualization tools. Hackathons are a valuable approach to inspire creative thinking, supplement training in data science, and foster collaborative scientific relationships, which are foundational practices for early-career researchers. The resources generated can be used to accelerate research on the genetics of PD.
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  • Brief Communication

Meet the Authors

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    Hampton Leonard

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    Ruqaya Murtadha, MSc

    National Institute on Aging

  • Alejandro Martínez Carrasco, MSc

    Key Personnel: Team Hardy

    University College London

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    Alina Jama

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    Amica Corda Muller-Nedebock

  • Ana Luisa Gil Martinez, PhD

    Key Personnel: Team Hardy

    University College London

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    Anastasia Illarionova

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    Anni Moore

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    Bernabe I Bustos

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    Bharati Jadhav

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    Brook Huxford

  • Catherine Storm, BSc

    Key Personnel: Team Wood

    University College London

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    Clodagh Towns

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    Dan Vitale

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    Devina Chetty

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    Eric Yu

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    Francis P Grenn

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    Gabriela Salazar

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    Geffrey Rateau

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    Hirotaka Iwaki

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    Inas Elasyed

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    Isabelle Francesca Foote

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    Zue Jansen van REnsburg

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    Jonggeol Jeff Kim