Global Parkinson’s Genetics Program – Code
By Blythe Lloyd onA suite of tools used by GP2 to analyze data.
Reconstitution of cargo-induced LC3 lipidation in mammalian selective autophagy
By taliag onGUV quantification
powereQTL – An R package for calculating sample size and power of bulk tissue and single-cell eQTL analysis
By Blythe Lloyd onPower and sample size calculation for bulk tissue and single-cell eQTL analysis based on ANOVA, simple linear regression, or linear mixed-effects model. It can also calculate power/sample size for testing the association of an SNP to a continuous type phenotype.
Software for analyzing the expression of TEs at locus-specific resolution
By Blythe Lloyd onTElocal takes RNA-seq (and similar data) and annotates reads to both genes & transposable elements.
