Day2023 supplementary dataset
By Emma Sherrell onDatasets for all supplementary figures S1-4 in GABAergic regulation of striatal spiny projection neuron excitability depends upon their activity state (2023).
Characterizing dysbiosis of the Parkinson’s disease gut microbiome using shotgun metagenomics
By Emma Sherrell onTo characterize the dysbiosis at species, gene family, and metabolic pathway resolution, the authors enrolled 490 PD and 234 age and geographically matched neurologically healthy individuals, collected stool and metadata, and conducted deep shotgun metagenomic sequencing of fecal DNA. Sequences and metadata are provided here.
CryoEM structures of amplified alpha-synuclein fibril class A type I with extended core from DLB case I
By Emma Sherrell onClassification: PROTEIN FIBRIL Organism(s): Homo sapiens Expression System: Escherichia coli BL21(DE3) Mutation(s): No
CryoEM structure of amplified alpha-synuclein fibril class A type I with compact core from DLB case III
By Emma Sherrell onClassification: PROTEIN FIBRIL Organism(s): Homo sapiens Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG Mutation(s): No
CryoEM structure of amplified alpha-synuclein fibril class A type I with extended core from DLB case VII
By Emma Sherrell onClassification: PROTEIN FIBRIL Organism(s): Homo sapiens Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG Mutation(s): No
CryoEM structure of amplified alpha-synuclein fibril class A type I with extended core from DLB case X
By Emma Sherrell onClassification: PROTEIN FIBRIL Organism(s): Homo sapiens Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG Mutation(s): No
CryoEM structures of amplified alpha-synuclein fibril class B type II with extended core from DLB case I
By Emma Sherrell onClassification: PROTEIN FIBRIL Organism(s): Homo sapiens Expression System: Escherichia coli BL21(DE3) Mutation(s): No
CryoEM structures of amplified alpha-synuclein fibril class B mixed type I/II with extended core from DLB case II
By Emma Sherrell onClassification: PROTEIN FIBRIL Organism(s): Homo sapiens Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG Mutation(s): No
CryoEM structures of amplified alpha-synuclein fibril class B type I with compact core from DLB case III
By Emma Sherrell onClassification: PROTEIN FIBRIL Organism(s): Homo sapiens Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG Mutation(s): No
CryoEM structure of amplified alpha-synuclein fibril class B type I with extended core from DLB case VII
By Emma Sherrell onClassification: PROTEIN FIBRIL Organism(s): Homo sapiens Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG Mutation(s): No
CryoEM structure of amplified alpha-synuclein fibril class B type II with extended core from DLB case VII
By Emma Sherrell onClassification: PROTEIN FIBRIL Organism(s): Homo sapiens Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG Mutation(s): No
CryoEM structure of amplified alpha-synuclein fibril class B type I with extended core from DLB case X
By Emma Sherrell onClassification: PROTEIN FIBRIL Organism(s): Homo sapiens Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG Mutation(s): No
Alpha-synuclein fibril from spontaneous control
By Emma Sherrell onClassification: PROTEIN FIBRIL Organism(s): Homo sapiens Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG Mutation(s): No
Examining the brain’s response to intestinal permeability and inflammation in the dextran sulfate sodium-induced colitis model
By Emma Sherrell onFrom the brain, cortex, hippocampus, ventral midbrain, and striatum were taken to examine both global and regionally-specific transcriptomic perturbances that emerge in response to gut leakiness. All tissues were assayed with high-throughput RNA sequencing.
Raw band intensity values for ATG3 WT or Mutants in vitro LC3 lipidation
By Emma Sherrell onRaw band intensity values used for the quantification of in vitro LC3 lipidation results (Fig4C) in Three-step docking by WIPI2, ATG16L1 and ATG3 delivers LC3 to the phagophore.
Raw band intensity values for Halo-LC3B
By Emma Sherrell onRaw band intensity values used for the quantification of percentage autophagy levels.
Proteome of R1441C and G2019S LRRK2 knock in mice after striatal motor learning task
By Julia Julia Leonard onTo identify the signaling pathways that underlie the motor learning deficits, specifically in the RC mice, the authors performed six-plex tandem mass tag (TMT) quantitative mass spectrometry (MS) to compare the protein expression of either RC or GS and WT mice following the five days of the rotarod test.
Tabular data of fast-scanning voltammetry and physiology experiments in LRRK2 KI mice
By Julia Julia Leonard onThe tabular data of fast-scanning cyclic voltammetry and physiology experiments from manuscript: "R1441C and G2019S LRRK2 knockin mice have distinct striatal molecular, physiological, and behavioral alterations." by Xenias et al.
Tabular data of striatal motor learning experiments in LRRK2 KI mice
By Julia Julia Leonard onThe tabular data of the behavioral experiments described in the manuscript titled, "R1441C and G2019S LRRK2 knockin mice have distinct striatal molecular, physiological, and behavioral alterations."
Tandem Mass Tag (TMT) label-based mass spectrometry analysis of RILPL1 interactors
By Julia Julia Leonard onPrimary mass spectrometry data associated with Fig.5 in the manuscript, "Parkinson’s VPS35 mutation induces LRRK2 mediated lysosomal association of RILPL1 and TMEM55B" (Association of RILPL1 with a lysosomal membrane integral protein, TMEM55B mediated by LRRK2 activity). Curtain link for the dataset: https://curtain.proteo.info/#/4f15d6c8-9192-4bb2-a2ff-da7aa542025c