Pipeline and MATLAB scripts for micro-CT-based fiber localization

Description

Pipeline and MATLAB scripts for micro-CT-based method for precise fiber localization and atlas alignment after performing micro-fiber photometry in behaving mice. The new micro-fiber array approach is capable of chronically measuring and optogenetically manipulating local dynamics across over 100 targeted locations simultaneously in head-fixed and freely moving mice, enabling investigation of cell-type and neurotransmitter-specific signals over arbitrary 3-D volumes.

Tags

Behavior/Behavioral studies
Fiber photometry
Imaging
In Vivo
Mouse
Optogenetics

Team

Team Cragg

Program

Collaborative Research Network

Theme

Circuitry and Brain-Body Interactions

Meet the Authors

Mai-Anh Vu, PhD

Key Personnel: Team Cragg,

Boston University
Mark Howe, PhD

Co-PI (Core Leadership): Team Cragg,

Boston University

Pipeline and MATLAB scripts for micro-CT-based fiber localization

Output Details

Meet the Authors

Mai-Anh Vu, PhD

Mark Howe, PhD

Related Research

Behavioral tasks-Falasconi & Kanodia et al 2025

Custom Phyton scripts related to Bouabid, S. et al (2025) “Distinct spatially organized striatum-wide acetylcholine dynamics for the learning and extinction of Pavlovian associations””

Custom MATLAB scripts related to Bouabid, S. et al. (2025) “Distinct spatially organized striatum-wide acetylcholine dynamics for the learning and extinction of Pavlovian associations”