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Saliva metagenomic data related to “Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagenomics”

Output Details

In this study, we proposed a semi-automated DNA extraction protocol for human salivary samples collected with a commercial kit, and compared the outcomes with the DNA extraction recommended by the manufacturer. This study demonstrates that our semi-automated protocol is suitable for shotgun metagenomic analysis, by significantly producing higher DNA fragment sizes, while allowing for improved sample treatment logistics with reduced technical variability and without compromising the structure of the oral microbiome.
Tags
  • Antemortem
  • Human
  • Human fecal samples
  • Metagenome

Meet the Authors

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    Victoria Meslier

    External Collaborator

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    Elisa Menozzi

    External Collaborator

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    Aymeric David

    External Collaborator

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    Christian Morabito

    External Collaborator

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    Sara Lucas Del Pozo

    External Collaborator

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    Alexandre Famechon

    External Collaborator

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    Janet North

    External Collaborator

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    Benoit Quinquis

    External Collaborator

  • Sofia Koletsi, MSc

    Project Manager: Team Schapira

    University College London

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    Jane Macnaughtan

    External Collaborator

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    Roxana Mezabrovschi

    External Collaborator

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    Stanislav Ehrlich

    External Collaborator

  • Anthony Schapira, PhD

    Lead PI (Core Leadership): Team Schapira

    University College London

  • Mathieu Almeida, PhD

    Co-PI (Core Leadership): Team Schapira

    INRAE (National Research Institute for Agriculture, Food and the Environment)

Aligning Science Across Parkinson's
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