Tailored workflows for the analysis of transposable elements (Garza et al, 2025)

By Raquel Garza, PhD
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Output Details

Description
For our latest preprint (Garza et al., 2025), we developed a collection of tailored workflows for the analysis of transposable elements across multiple data types, including single-nucleus RNA-seq, deep bulk RNA-seq, long-read RNA-seq, and DNA-seq. These workflows are implemented as Snakemake pipelines, Jupyter notebooks, R markdowns, and scripts. A comprehensive overview is available in the associated GitHub README.
Tags
  • Long-read sequencing
  • RNA-seq
  • Scripts
  • snRNA-seq (Single-nuclear RNA-seq)
  • Transposable elements
Team
Team Jakobsson
Program
Collaborative Research Network
Theme
Neuro-Immune Interactions

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