Multiome preprocessing seurat

By Markus Bösch, PhD, Christos Vlachos, PhD, Emiel Geeraerts and Thierry Voet, PhD
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Output Details

Description
Workflow to preprocess single nucleus multiome data (gene expression + ATAC) produced with 10X Genomics Cellranger ARC in Seurat. Using a sequential set of scripts, go from a folder with cellranger-arc outputs to a Seurat object with dimensionality reduction and clustering for gene expression data.
Identifier (DOI)
10.5281/zenodo.13620951
Tags
  • 10X Genomics
  • Multi-omics
  • Multimodal
  • Single-cell ATAC-seq
  • snRNA-seq (Single-nuclear RNA-seq)
Team
Team Voet
Program
Collaborative Research Network
Theme
PD Functional Genomics

Meet the Authors

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