Catalog

Teams

Themes

Code

huw-morris-lab/PDD_GWSS

Code used in the analysis from the manuscript Real et al., Association between the LRP1B and APOE loci and the development of Parkinson’s disease dementia (2022): https://doi.org/10.1101/2022.05.23.22275465

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Code

RHReynolds/neurodegen-psych-local-corr: Code to determine local and global genetic correlations between several neurodegenerative and neuropsychiatric disorders with LAVA and LDSC, respectively.

Code for the paper: Local genetic correlations exist among neurodegenerative and neuropsychiatric diseases: https://doi.org/10.1101/2022.05.30.22275781

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EMPD

Code used on the genetic determinants of early motor PD progression manuscript.

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Code

Code for making forest plots for top GWAS loci

This repository contains the script used to create forest plots for top loci [part of code for the PD progression survival GWAS to mortality, Hoehn and Yahr stage 3 or greater (H&Y3+), and dementia].

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Code

katiekellyucl/W-PPI-NA-NSL-complex: v1.0.0. W-PPI-NA/NSL_complex

Software for in Silico analysis linking the NSL complex to Parkinson’s disease and the mitochondria (protein-protein interaction data to functional enrichment analysis).

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Code

LBD-case-case-GWAS

Code used in the analysis from the manuscript Wu et al., Investigation of the genetic aetiology of Lewy body diseases with and without dementia (2023).

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ensemblQueryR

A package allowing easy integration of Ensembl querying with a user’s R workflow.

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Code

Splicing-accuracy-manuscript

Code for the splicing-accuracy manuscript (pre-print DOI: doi.org/10.1101/2023.03.29.534370)

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Long-read RNA seq analysis using Talon

This is a snakemake pipeline that takes Oxford Nanopore Sequencing (ONT) data (fastq) as input, generates fastq stats using nanostat, performs fastq processing and filtering using pychopper, maps the reads to the genome using minimap2, and uses talon to assemble and quantify transcripts. It is forked from ANNSeq. The link includes the dag of the pipeline.

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Team Wood

Themes

Code

LiD genetic determinants study under CPH regression models

Code to perform the study of LiD genetic determinants under CPH regression models and functional annotation analyses.

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Themes