Human Postmortem-Derived Brain Sequencing Collection (Harmonized Collection)

By Andy Henrie, Hampton Leonard, Heather Ward, Sreeganga Chandra, PhD, Biqing Zhu, Anthony Russo, MSc, Jae Min Park, BA, Lee Marshall, PhD, Kimberly Paquette, BA, Kaitlyn Westra, Andrew Pyman, Ellison Lopes, Celia Kun-Rodrigues, MSc, Rita Guerreiro, Anita Adami, MSc, Cole Wunderlich, BSc, Talitha Forcier, PhD, Raquel Garza, PhD, Annelies Quaegebeur, MD, PhD, Yogita Sharma, PhD, Oliver Tam, PhD, Geidy Serrano, PhD, Thomas Beach, Madison Cline, MSc, Zhixiang Liao, Idil Tuncali, MSc, Monika Sharma, PhD, Jacob Parker, PhD, Zechuan Lin, PhD, Jie Yuan, PhD, Nathan Haywood, BSc, Sean Simmons, PhD, Maoxuan Lin, PhD, Kwanho Kim, Xufei Teng, PhD, Daniel El Kodsi, PhD, Roger Barker, PhD, Jose Bras, PhD, Xianjun Dong, PhD, Molly Gale Hammell, PhD, Agnete Kirkeby, PhD, Joshua Levin, PhD, Le Zhang, PhD, David Hafler, Johan Jakobsson, PhD, Michael Lee, PhD and Clemens Scherzer, MD
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Output Details

Description
The Human Postmortem-derived Brain Sequencing Collection is a harmonized repository comprised of sequencing data (Single-Nucleus RNA-seq and PolyA RNA-seq) contributed by ASAP CRN teams. The samples have been harmonized across cell ranger data. The current collection will be expanded and improved as additional Human PMDBS data is uploaded into the ASAP CRN Cloud. When complete, the collection will provide sequencing data produced by the following techniques: single-nucleus RNAseq, single-cell RNAseq, bulk RNA-seq, ATAC-seq, long read WGS, and single-nucleus multiome sequencing (paired snRNAseq, snATACseq).
Identifier (DOI)
10.5281/zenodo.8384742
Tags
  • CRN Cloud Platform
Team
Team Hafler, Team Lee, Team Jakobsson and Team Scherzer
Program
Collaborative Research Network
Theme
Neuro-Immune Interactions PD Functional Genomics

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