Spatially organized striatum-wide acetylcholine dynamics for the learning and extinction of Pavlovian cues and actions
By Emma Sherrell onThe used array fiber photometry in mice to investigate how ACh release across the striatum evolves during learning and extinction of Pavlovian associations.
Sequencing dMDA Products on the MinION using Oxford Nanopore’s Rapid Barcoding Kit
By Emma Sherrell onUsing Oxford Nanopore MinION and the Rapid Barcoding library preparation kit, the authors perform long-read sequencing on droplet multiple displacement amplification (dMDA) products generated from single nuclei.
Source data of “Disruption of lysosomal proteolysis in astrocytes facilitates midbrain organoid proteostasis failure in an early-onset Parkinson’s disease”
By Emma Sherrell onTabular datasets for Morrone Parfitt, G., Coccia, E., Goldman, C. et al. Disruption of lysosomal proteolysis in astrocytes facilitates midbrain organoid proteostasis failure in an early-onset Parkinson's disease model. Nat Commun 15, 447 (2024). https://doi.org/10.1038/s41467-024-44732-2
Biochemical fractionation of human α-Synuclein in a drosophila model of synucleinopathies
By Emma Sherrell onThe authors tested different detergents for their ability to solubilize human α-synuclein carrying the pathological mutation A53T from the brains of aged flies.
Locus coeruleus injury modulates ventral midbrain neuroinflammation during DSS-induced colitis
By Emma Sherrell onEvidence is mounting that injury and inflammation in the gut and locus coeruleus (LC), respectively, underlie Parkinson's disease symptoms, and the injury of these systems is central to the progression of PD. In this study, the authors generate a novel two-hit mouse model that captures both features.
A comparative analysis of Parkinson’s disease and inflammatory bowel disease gut microbiomes highlights shared depletions in key butyrate-producing bacteria
By Emma Sherrell onTo identify shared and distinct features of the PD and IBD microbiome, the authors performed a joint analysis of 54 PD, 26 IBD, and 16 healthy control gut metagenomes recruited from clinics at the University of Florida and directly compared the gut microbiomes from PD and IBD persons.
Calf intestine alkaline phosphatase (CIAP) treatment
By Emma Sherrell onAlpha-synuclein phosphorylated at serine 129 (PSER129) occurs in two pools, non-aggregated (physiological) and aggregated (disease). This protocol allows for the selective dephosphorylation of non-aggregated PSER129 and enhances the specificity and sensitivity immunodetection of aggregated PSER129. Thus, this protocol can be used to differentiate physiological from aggregated PSER129.
Cortico-basal ganglia plasticity in motor learning
By Emma Sherrell onMany motor behaviors require learning through repeated practice. Among the brain’s motor regions, the cortico-basal ganglia circuit is particularly crucial for acquiring and executing motor skills, and neuronal activity in these regions is directly linked to movement parameters. Here, the authors detail the cortico-basal ganglia plasticity in motor learning.
Ginkgo bins for hg38 and T2T-CHM13
By Emma Sherrell onVariable and constant-sized bins for GRCh38 and T2T-Chm13 were generated using the buildGenome scripts provided with Ginkgo (https://github.com/robertaboukhalil/ginkgo/tree/master/genomes/scripts).
SureSelect XT HS2 DNA to prepare libraries for single-cell Whole Genome Sequencing (scWGS) after single-cell Whole Genome Amplification (scWGA)
By Emma Sherrell onThe authors adapted the SureSelect XT HS2 DNA protocol to prepare libraries using as input material samples after single-cell Whole Genome Amplification (scWGA), instead of genomic DNA samples, for library preparation for Illumina single-cell Whole Genome Sequencing (scWGS).
The gut microbiota in Parkinson’s disease: Interactions with drugs and potential for therapeutic applications
By Emma Sherrell onThis article summarizes the most up-to-date knowledge in pharmacomicrobiomics in PD, and discusses how the manipulation of gut microbiota represents a potential new therapeutic avenue for PD.
Excessive firing of dyskinesia-associated striatal direct pathway neurons is gated by dopamine and excitatory synaptic input
By Emma Sherrell onThe authors explored the cellular and synaptic mechanisms of levodopa-induced dyskinesia (LID), a complication of Parkinson’s disease therapy characterized by involuntary movements. Findings suggest how the intrinsic and synaptic properties of heterogeneous dMSN subpopulations integrate to support action selection.
Autophagy preferentially degrades non-fibrillar polyQ aggregates
By Emma Sherrell onPublication: These results suggest that the limited efficiency of autophagy in clearing polyQ aggregates is due to the inability of autophagosomes to interact productively with the non-deformable, fibrillar disease aggregates. View original preprint.
Parkinson’s disease MAGMA analysis ranked genes
By Emma Sherrell onGWAS summary statistics for Parkinson’s Disease risk were obtained from EBI GWAS Catalog Study ID: GCST009325 (PMID: 31701892) and processed using the MAGMA tool on FUMA’s online platform to generate a scored list (z-scores) of significant genes.
CNV calling pipeline for low coverage single-cell whole genome sequencing data
By Emma Sherrell onPipeline for analyzing, filtering, and comparing copy number variations from single-cell whole genome sequencing data that were amplified using PicoPLEX, PTA, or droplet MDA.
Parkinsonism Sac domain mutation in Synaptojanin-1 affects ciliary properties in iPSC-derived dopaminergic neurons
By Emma Sherrell onThe authors investigated the impact of SJ1 on DA neurons using iPSC-derived SJ1 KO and SJ1RQKI DA neurons and their isogenic controls. Results suggest that SJ1 may contribute to the control of ciliary protein dynamics in DA neurons, with implications on cilia-mediated signaling.
Integrating population genetics, stem cell biology, and cellular genomics to study complex human diseases
By Emma Sherrell onHere, the authors discuss how the intersection of stem cell biology, population genetics, and cellular genomics can help resolve the functional consequences of human genetic variation.
Contextual AI models for single-cell protein biology
By Emma Sherrell onHere, the authors introduce PINNACLE, a geometric deep-learning approach that generates context-aware protein representations. PINNACLE’s ability to adjust its outputs on the basis of the context in which it operates paves the way for large-scale context-specific predictions in biology.
Genome-wide CRISPR screen identifies neddylation as a regulator of neuronal aging and AD neurodegeneration
By Emma Sherrell onAging is the biggest risk factor for the development of Alzheimer’s disease (AD). Here, the authors performed a whole-genome CRISPR screen to identify regulators of neuronal age and show that the neddylation pathway regulates both cellular age and AD neurodegeneration in a human stem cell model.
SARS-CoV-2 infection causes dopaminergic neuron senescence
By Emma Sherrell onCOVID-19 patients commonly present with signs of central nervous system and/or peripheral nervous system dysfunction. Here, the authors show that midbrain dopamine (DA) neurons derived from human pluripotent stem cells (hPSCs) are selectively susceptible and permissive to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection.