Midbrain organoid differentiation in spinner flasks
By onMidbrain differentiation protocol using spinner flasks
Rab8a expression and purification
By onRecombinant Rab8a expression and purification protocol as used by the Leschziner and Reck-Peterson Labs
pCAG-ATG13 (363-517)-ULK1 (836-1050)-TSF
By onPlasmid for mammalian expression of ATG13 C-terminal and ULK1 MIT domain fusion complex.
Evaluation of pUb kinetics using 3D-SIM
By onAssociated with preprint: https://www.biorxiv.org/content/10.1101/2022.11.02.514817v1
Assaying starvation-induced autophagy in HeLa cells
By onA method for assaying starvation-induced autophagy in HeLa cells that have been transfected with Halo-tagged constructs.
Subcellular and regional localization of mRNA translation in midbrain dopamine neurons
By onUsing, highly sensitive ribosome-bound RNA sequencing and imaging to characterize the translatome, the authors uncovered local mRNA translation of dopamine synthesis, release, and reuptake machinery in dendrites, but not axons.
qPCR of α-synuclein, TNF and NF-κβ
By onA procedure for quantitative real time reverse transcription PCR of α-synuclein, TNF, and NF-κβ.
Immunohistochemistry using paraffin embedded tissue
By onImmunohistochemistry using paraffin embedded tissue
pCAG-mcherry- WIPI2dR108E- cs-TEV -STREP
By onPlasmid for mammalian expression of human WIPI2d with N-terminal mCherry and C-terminal Strep.
Accelerated Ovarian Failure AOF mouse model: a model of transitional menopause
By onThe novel model of AOF successfully replicates the human peri- and post-menopause stages, including erratic estrous cycles and hormone fluctuations, followed by undetectable estrogen levels.
Immunocytochemistry of cultured human Medium Spiny Neurons (MSNs)
By onThis protocol describes the immunolabelling of one or several protein targets on PFA-fixed cell culture on glass coverslips.
Live imaging and analysis to investigate phase separation properties of NEMO during mitophagy
By onProtocol for live imaging and analysis to investigate phase separation properties of NEMO during mitophagy.
Tet-off Full Length Tau (0N4R, P301L/V337M)
By onPlasmid: Tet-off Full Length Tau (0N4R, P301L/V337M). Associated with the following preprint: Saha et al., 2022 (published on biorxiv on February 19, 2022).
Unconventional Initiation of PINK1/Parkin Mitophagy by Optineurin
By onThis work reveals that OPTN mitophagy initiation is mechanistically distinct and highlights the mechanistic plasticity of selective autophagy pathways.
Parkinson’s VPS35[D620N] mutation induces LRRK2-mediated lysosomal association of RILPL1 and TMEM55B
By onThis study uncovers a pathway through which dysfunctional lysosomes resulting from the VPS35 mutation recruit and activate LRRK2 on the lysosomal surface, driving assembly of the RILPL1-TMEM55B complex.
Primary confocal microscopy data associated with the manuscript “Parkinson’s VPS35[D620N] mutation induces LRRK2 mediated lysosomal association of RILPL1 and TMEM55B” (doi: 10.1101/2023.06.07.544051)
By onConfocal microscopy images, CellProfiler Excel files of Pearson's coefficients between TMEM55B/RILPL1 or pRab10/RILPL1 in R1441C MEF or VPS35 MEF cells, and Prism files of graphed Pearson's coefficients for each condition, as seen in doi: 10.1101/2023.06.07.544051.
