Refinement of efficient encodings of movement in the dorsolateral striatum throughout learning
By savannah onPreprint: The striatum is required for normal action selection, movement, and sensorimotor learning. Here, the authors assess how striatal ensembles are formed and how their dynamics may evolve throughout motor learning.
ASAP CRN Cloud GitHub
By savannah onThis GitHub repository, maintained by DataTecnica and DNAstack, includes the curation methodology and code for the harmonization of ASAP CRN Cloud data.
Mitochondrial damage triggers concerted degradation of negative regulators of neuronal autophagy
By savannah onPreprint: Mutations in genes that regulate mitophagy, a key mitochondrial quality control pathway, are causative for neurological disorders including Parkinson’s. Here, the authors identify a novel stress response pathway activated by mitochondrial damage that regulates mitophagy in neurons.
ASAP CRN Cloud README
By savannah onThe README file provides concise guidance on accessing and utilizing the ASAP CRN Cloud data, including data description, curation methodology, harmonization code, and usage guidelines.
Targeted micro-fiber arrays for measuring and manipulating localized multi-scale neural dynamics over large, deep brain volumes during behavior
By savannah onPublished: The authors designed a new micro-fiber array approach capable of chronically measuring and optogenetically manipulating local dynamics across over 100 targeted locations simultaneously in head-fixed and freely moving mice, enabling the investigation of cell-type and neurotransmitter-specific signals over arbitrary 3D volumes at a spatial resolution and coverage previously inaccessible.
Rapid modulation of striatal cholinergic interneurons and dopamine release by satellite astrocytes
By savannah onPreprint: Astrocytes are increasingly thought to have underestimated important roles in modulating neuronal circuits. Astrocytes in the striatum can regulate dopamine transmission by governing the extracellular tone of axonal neuromodulators. The authors reveal that striatal astrocytes occupy a cell type-specific anatomical and functional relationship with cholinergic interneurons.
An axonal brake on striatal dopamine output by cholinergic interneurons
By savannah onPreprint: Depolarization of distal axons is necessary for neurons to translate somatic action potentials into neurotransmitter release. Studies have shown that striatal cholinergic interneurons can drive ectopic action potentials in dopamine (DA) axons and trigger DA release. The authors show that this action occurs within a broader context of axonal signal integration.
Differentiation of human cortical neurons (CNs) from induced pluripotent stem cells (iPSCs)
By savannah onThis protocol described the production of human cortical neurons from induced pluripotent stem cells.
The integrated stress response in brain diseases: A double-edged sword for proteostasis and synapses
By savannah onThe integrated stress response (ISR) is a conserved biochemical pathway that regulates protein synthesis. As such, the ISR is implicated in a wide range of diseases, including brain disorders. In this review, the authors consider the ISR's contribution to brain disorders through the lens of its potential effects on synaptic plasticity.
Mouse α-synuclein fibrils are structurally and functionally distinct from human fibrils associated with Lewy body diseases
By savannah onPreprint: The intricate process of α-synuclein aggregation and fibrillization hold pivotal roles in Parkinson’s disease (PD). While mouse α-synuclein can fibrillate in vitro, whether these fibrils can reproduce structures in the human brain remains unknown. Here the authors report the first atomic structure of mouse α-synuclein fibrils.
Code for Tang et al., 2024
By savannah onCode for Tang et al., 2024 (https://doi.org/10.1038/s41586-023-06941-5) - https://doi.org/10.5281/zenodo.10146089.
Refinement of efficient encodings of movement in the dorsolateral striatum throughout learning (DATA)
By savannah onLocomotion velocity (rod encoder) and calcium imaging data were used in the research publication, "Refinement of efficient encodings of movement in the dorsolateral striatum throughout learning" by Jaidar and Albarran et al., 2024.
Refinement of efficient encodings of movement in the dorsolateral striatum throughout learning (CODE)
By savannah onCustom MATLAB code was used to perform all the analyses contained within the research publication, "Refinement of efficient encodings of movement in the dorsolateral striatum throughout learning" by Jaidar and Albarran et al., 2024.
Isolation and lipidomic profiling of neuronal lipid droplets: Unveiling the lipid landscape for insights into neurodegenerative disorders
By savannah onPreprint: Recent advances have expanded the role of lipid droplets (LDs) beyond passive lipid storage, implicating their involvement in metabolic processes. Neuronal LDs have been identified in several neural structures, raising questions about their contribution to neurodegenerative disorders. This study outlines an improved methodology to stimulate and isolate mature LDs.
DDHD2 is necessary for activity-driven fatty acid fueling of nerve terminal function
By savannah onPreprint: The data presented here demonstrates that neurons and their nerve terminals can make use of LDs during electrical activity to provide metabolic support when glucose is in short supply.
Lysosome damage triggers acute formation of ER to lysosomes membrane tethers mediated by the bridge-like lipid transport protein VPS13C
By savannah onPreprint: Based on genetic studies, lysosome dysfunction is thought to play a pathogenetic role in Parkinson’s disease (PD). Here, the authors show that VPS13C, a bridge-like lipid transport protein and a PD gene, is a sensor of lysosome stress/damage.
Decreased cellular excitability of pyramidal tract neurons in primary motor cortex leads to paradoxically increased network activity in simulated parkinsonian motor cortex
By savannah onPreprint: Decreased excitability of pyramidal tract neurons in layer 5B (PT5B) of primary motor cortex (M1) has recently been shown in a dopamine-depleted mouse model of parkinsonism. The authors hypothesized that decreased PT5B neuron excitability would disrupt firing patterns of neurons in layer 5 of primary motor cortex.
Network nature of ligand-receptor interactions underlies disease comorbidity in the brain
By savannah onPreprint: Neurodegenerative disorders have overlapping symptoms and high comorbidity rates, but this is not reflected in overlaps of risk genes. The authors investigated whether ligand-receptor interactions (LRIs) are a mechanism by which distinct genes associated with disease risk can impact overlapping outcomes.
Raw images and quantification of IHC TYROBP from Kilfeather & Khoo et al. (2024) “Single-cell spatial transcriptomic and translatomic profiling of dopaminergic neurons in health, aging, and disease”
By savannah onRaw microscopy images and quantification of TYROBP expression in mouse brain slices.
Raw images and quantification of IHC CASR expression from Kilfeather & Khoo et al. (2024) “Single-cell spatial transcriptomic and translatomic profiling of dopaminergic neurons in health, aging, and disease”
By savannah onRaw microscopic images and quantification of CASR expression in mouse brain slices.