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  • An open-source head-fixation and implant-protection system for mice

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    This study presents a head-fixation and implant-protection system for mice including a headbar, headhat and head fixation station to facilitate experimental procedures in vivo. All 3D-printing files are open source and readily available and editable

  • Cryosectioning Mouse Brain

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    This protocol details the cryosectioning of the mouse brain.

  • Mouse Stereotaxic Surgery

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    This protocol describes the steps for performing stereotaxic surgery in mice. It is applicable to intracranial injections (e.g. virus, drug) and placement of implants (e.g. optical fibers, electrode arrays) into targeted regions of mouse brains.

  • His-ATG3-C264A

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    Plasmid: ATG3 mutant overexpression in E.Coli. 6His-TEVsite-ATG3-C264A-stop.

  • Validation of Genotyping Method for L444P Mice Ear-Clips.

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    || Team Schapira || Authors Revi Shahar Golan, David ChauAbstractAim: the genotyping is used to identify if mice are heterozygote (hetero) or Wild-Type (WT), and the aim of the work is to validate the digestion method, and PCR program, the PCR primers, and the interpretation of the results.   Associated with publication: doi: 10.1093/brain/awx221

  • Expression and purification MBP-ATG9 Constructs

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    Expression and purification from HEK cells of ATG13, ATG101 and FOLDON-ATG9A proteins.

  • Microsomal membrane isolation from cell culture

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    Microsomal membrane isolation from cell culture

  • Untargeted lipidomics analysis for Golgi immunopurification (Golgi-IP)

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    This protocol provides details for analyzing GolgiIP lipidomics samples using liquid chromatography mass spectrometry (LC-MS) for nonpolar lipid profiling.

  • EMPD

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    Code used for manuscript: Genome-wide Analysis of Motor Progression in Parkinson Disease

  • CRISPR/Cas9-Based Functional Genomics in Human Induced Pluripotent Stem Cell–Derived Models: Can “the Stars Align” for Neurodegenerative Diseases?

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    The article discusses the use of CRISPR/Cas9 in studying human diseases using stem cell models, highlighting its potential for advancing functional genomics research.

  • GUV preparation

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    Protocol for GUV preparation for membrane tube assay application.

  • The annotation of GBA1 has been concealed by its protein-coding pseudogene GBAP1

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    The authors identify novel transcripts from both GBA1 and GBAP1, including protein-coding transcripts that are translated in vitro and detected in proteomic data, but that lack GCase activity.

  • PGK EGFP-LC3B

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    Plasmid for mammalian expression of fluorescently-tagged LC3B, marker for autophagic vesicles.

  • Expression and purification Twin-STREP-FLAG tagged ATG13:ATG101 constructs

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    Expression and purification Twin-STREP-FLAG tagged ATG13:ATG101 constructs

  • Confirming circRNA expression by qPCR

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    This protocol delineates a qPCR method to confirm the expression of circRNAs extracted from brain samples.

  • Glucosylceramidase Beta (GBA) Genotyping

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    This protocol details the steps for GBA genotyping. This protocol has been adapted from the PRoBaND Clinical Consortium (incorporating methods described by Neuman et al., 2009 and Stone et al., 2000) and has been used for all publications for PRoBaND / Tracking Parkinson's describing clinical data and outcomes with respect to GBA status

  • Standard Operating Procedure: Mouse Stereotaxic Intracranial Injection Surgery

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    SOP outlines procedures for mouse stereotaxic intracranial injection surgery.

  • pCAG-GST-ATG13 (402-517)

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    Plasmid for mammalian expression of GST tagged ATG13 (402-517).

  • Sex-specific microglial responses to glucocerebrosidase inhibition

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    Morpho-dynamic analysis occurring in primary cells derived from female and male mice in response to proinflammatory stimulations and glucocerebrosidase inhibition.

  • RBG Motif Bridge-Like Lipid Transport Proteins: Structure, Functions, and Open Questions

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    The life of eukaryotic cells requires the transport of lipids between membranes, which are separated by the aqueous environment of the cytosol. Vesicle-mediated traffic along the secretory and endocytic pathways and lipid transfer proteins (LTPs) cooperate in this transport. Until recently, known LTPs were shown to carry one or a few lipids at a time and were thought to mediate transport by shuttle-like mechanisms. Over the last few years, a new family of LTPs has been discovered that is defined by a repeating β-groove (RBG) rod-like structure with a hydrophobic channel running along their entire length. This structure and the localization of these proteins at membrane contact sites suggest a bridge-like mechanism of lipid transport. Mutations in some of these proteins result in neurodegenerative diseases. Here we review the known properties and well-established or putative physiological roles of these proteins, and we highlight the many questions that remain open about their functions.

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Aligning Science Across Parkinson's
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