ensemblQueryR

Output Details

A package allowing easy integration of Ensembl querying with your R workflow! The goal of ensemblQueryR is to seamlessly integrate querying of Ensembl databases into your R workflow. It does this by formatting and submitting user queries to the Ensembl API. At present, the package contains functions for the three Ensembl Linkage Disequilibrium (LD) 'endpoints': 1. Query LD in a window around one SNP, 2. Query LD for a pair of query SNPs and 3. Query LD for SNPs at a specified genomic locus.
Identifier (DOI)
10.5281/zenodo.7837882
Tags
  • Ensembl
  • Linkage disequilibrium (LD)
  • Query
  • SNPs (Single Nucleotide Polymorphisms)
  • Workflow

Meet the Authors

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    Aine Fairbrother-Browne, MSc

    Key Personnel: Team Hardy Team Wood

    University College London