Regional Mouse Brain Analysis (Modified QUINT)

This is series of protocols that has been adapted from published and unpublished protocols broadly referred to as the QUINT workflow: QuPath visualization/segmentation QuickNII Brain Atlas Registration QMask Hemispheric Separation Visualign Transformation Nutil Data Integration QUINT Workflow Appendix QUINT Workflow for Fluorescence Note that the original QUINT workflow was generated by Yates and colleagues, and all credit for development of these programs goes to that team. References for each software are listed in the protocol.