In Vivo Electrophysiology (Mouse)
By onThis protocol describes the in vivo electrophysiology method for recording neuronal activity in mice.
RNAScope in situ hybridization (ISH) multiplex fluorescent
By onInstructions to perform ISH using RNAscope kit from ACDBio company optimized for frozen mouse brain and nodose ganglia sections.
Immunohistochemistry
By onThis protocol describes immunohistochemical staining of fixed brain sections.
pCAG-MBP-ATG9 (1-830)
By onPlasmid: Expresses human ATG9 C-terminal truncation mutant in mammalian cells.
Culture and transfection of HEK293T cells
By onThis protocol describes a standard procedure culturing and transfecting HEK293T cells Protocol overview: A. Culturing HEK293T cells B. Transfection of HEK293T cells with Lipofectamine 2000
Staining of cells with GolgiTracker for Golgi flow cytometry analysis
By onMethod that allows the staining of intact Golgi using GolgiTracker for subsequent flow cytometry analysis.
Px330-EGFP-LRRK2-CRISPR/Cas9
By onIt can be used to introduce LRRK2-G2019S mutation using CRISPR/Cas9 based genome editing.
Highly efficient generation of isogenic pluripotent stem cell models using prime editing
By onPrime editing (PE) simplifies creating human pluripotent stem cell (hPSC) disease models by optimizing mRNA delivery with editing efficiency increased up to 13-fold, enabling correction or introduction of Parkinson's disease mutations in hPSCs.
pGST2-GST-TEV-OPTN S177D S473D
By onPlasmid for the expression and purification of GST-TEV-OPTN S177D S473D. Internal Ref: SMC1588
Single cell analysis of iPSC-derived midbrain organoids
By onThe following script was used for analysis of gene corrected (GC) versus GBA1 mutant (MUT) midbrain organoids. The purpose was to combine, filter, integrate, and identify clusters and differentially expressed genes sets. This is part of a Collection of protocols (dx.doi.org/10.17504/protocols.io.8epv593dng1b/v1) for the paper "Glucocerebrosidase, a Parkinson´s disease-associated protein, is imported into mitochondria and regulates complex I assembly and function" (https://doi.org/10.21203/rs.3.rs-1521848/v1)
Midbrain organoid differentiation in spinner flasks
By onMidbrain differentiation protocol using spinner flasks
Rab8a expression and purification
By onRecombinant Rab8a expression and purification protocol as used by the Leschziner and Reck-Peterson Labs
pCAG-ATG13 (363-517)-ULK1 (836-1050)-TSF
By onPlasmid for mammalian expression of ATG13 C-terminal and ULK1 MIT domain fusion complex.
Evaluation of pUb kinetics using 3D-SIM
By onAssociated with preprint: https://www.biorxiv.org/content/10.1101/2022.11.02.514817v1
Assaying starvation-induced autophagy in HeLa cells
By onA method for assaying starvation-induced autophagy in HeLa cells that have been transfected with Halo-tagged constructs.
Subcellular and regional localization of mRNA translation in midbrain dopamine neurons
By onUsing, highly sensitive ribosome-bound RNA sequencing and imaging to characterize the translatome, the authors uncovered local mRNA translation of dopamine synthesis, release, and reuptake machinery in dendrites, but not axons.
qPCR of α-synuclein, TNF and NF-κβ
By onA procedure for quantitative real time reverse transcription PCR of α-synuclein, TNF, and NF-κβ.
Immunohistochemistry using paraffin embedded tissue
By onImmunohistochemistry using paraffin embedded tissue
