Microbiome-based biomarkers to guide personalized microbiome-based therapies for Parkinson’s disease
By Emma Sherrell onNot all persons with PD have a dysbiotic microbiome, and not all dysbiotic PD microbiomes have the same features. The authors have developed an intuitive and easily modifiable method to identify the optimal candidates for microbiome-based clinical trials, and subsequently, for treatments that are personalized for each individual's dysbiotic features.
R Code (RNA editing)
By Emma Sherrell onThe repository at https://github.com/karishdsa/ipscAstrNeurCocul contains single-cell and bulk RNA sequencing analysis of the cell culture models utilized in the study. This current repository contains the analysis of RNA editing in the cell culture models, as well as in a published dataset of post-mortem brain samples.
Alpha-synuclein aggregates trigger anti-viral immune pathways and RNA editing in human astrocytes
By Emma Sherrell onThis current repository contains single-cell and bulk RNA-sequencing analysis of the cell culture models utilized in the study. The repository at https://github.com/aaronwagen/Astrocytes_editing contains the analysis of RNA editing in the cell culture models, as well as in a published dataset of post-mortem brain samples.
Script for the spike numbers in LRRK2 KI mice
By Emma Sherrell onThe script determines the number of spikes for each current injected step in the manuscript titled R1441C and G2019S LRRK2 knockin mice have distinct striatal molecular, physiological, and behavioral alterations by Xenias et al. In addition, various parameters such as the threshold, maximum firing, rheobase, dy/dt, and FWHM are determined.
Fiber photometry data analysis
By Emma Sherrell onCustom code for fiber photometry data pre-processing (bleaching correction, DF/F calculation, behavioral parsing...) are provided.
Proportion and distribution of neurotransmitter-defined cell types in the ventral tegmental area and substantia nigra pars compacta
By Emma Sherrell onThe relative distributions and proportions of neurotransmitter-defined cell types across VTA and SNc have remained unclear. The data shown here complement recent single-cell RNAseq studies and support a more diverse landscape of neurotransmitter-defined cell types in VTA and SNc.
GLP-1 receptor agonism ameliorates Parkinson’s disease through 1 modulation of neuronal insulin signalling and glial suppression
By Emma Sherrell onNeuronal insulin resistance is linked to the pathogenesis of Parkinson's disease through unclear, but potentially targetable, mechanisms. The authors delineated neuronal and glial mechanisms of insulin resistance and glucagon-like 1 peptide (GLP-1) receptor agonism in human iPSC models of synucleinopathy.
Adoptive transfer of mitochondrial antigen-specific CD8+ T-cells in mice causes parkinsonism and compromises the dopamine system
By Emma Sherrell onThe degeneration of dopamine neurons in the ventral midbrain is linked to the development of motor symptoms in Parkinson's disease (PD). Evidence suggests that neuroinflammation and mitochondrial dysfunction drive neurodegenerative mechanisms in PD. Results provide evidence for mitochondrial-specific CD8+ T cell infiltration in the brain in driving PD-like pathology.
LRRK2 G2019S mutation suppresses differentiation of Th9 and Treg cells via JAK/STAT3
By Emma Sherrell onThe Leucine-rich repeat kinase-2 (LRRK2) G2019S mutation is one of the well-recognized genetic risk factors in Parkinson's disease (PD). Increased LRRK2 activity was also observed in immune cells from PD patients. The authors generated and characterized a new T cell receptor (TCR) transgenic mouse strain bearing LRRK2 G2019S knock-in mutation.
Deep sequencing of proteotoxicity modifier genes uncovers a Presenilin-2/beta-amyloid-actin genetic risk module shared among alpha-synucleinopathies
By Emma Sherrell onConventional genetic analyses are underpowered to address whether neurodegenerative diseases linked to misfolding of the same protein share genetic risk drivers or whether different protein-aggregation pathologies in neurodegeneration are mechanistically related. The authors study patients based on protein aggregation phenotype to detect variants in a targeted set of genes.
Alpha-synuclein aggregates trigger anti-viral immune pathways and RNA editing in human astrocytes
By Emma Sherrell onParkinson's disease is a neurodegenerative disease characterized by a proteinopathy with marked astrogliosis. To investigate how a proteinopathy may induce a reactive astrocyte state, and the consequence of reactive astrocytic states on neurons, the authors generated hiPSC-derived astrocytes, neurons, and co-cultures and exposed them to small soluble alpha-synuclein aggregates.
Dopamine neuron activity encodes the length of upcoming contralateral movement sequences
By Emma Sherrell onPublished: Dopamine neurons (DANs) in the substantia nigra pars compacta (SNc) have been related to movement vigor, and loss of these neurons leads to bradykinesia in Parkinson’s disease. Here the authors investigate whether DANs encode a general motivation signal or modulate movement kinematics. View original preprint.
His-ATG3
By Emma Sherrell onPlasmid: ATG3 protein (WT) overexpression in E.Coli. 6His-TEVsite-ATG3 WT-stop.
His-ATG3-C264A
By Emma Sherrell onPlasmid: ATG3 mutant overexpression in E.Coli. 6His-TEVsite-ATG3-C264A-stop.
His-ATG3-Y209A
By Emma Sherrell onPlasmid: ATG3 mutant overexpression in E.Coli. 6His-TEVsite-ATG3-Y209A-stop.
His-ATG3-Y210A
By Emma Sherrell onPlasmid: ATG3 mutant overexpression in E.Coli. 6His-TEVsite-ATG3-Y210A-stop.
His-ATG3-T244A
By Emma Sherrell onPlasmid: ATG3 mutant overexpression in E.Coli. 6His-TEVsite-ATG3-T244A-stop.
His-ATG3-H262A
By Emma Sherrell onPlasmid: ATG3 mutant overexpression in E.Coli. 6His-TEVsite-ATG3-H262A-stop.