Proteomics analysis of autophagy cargos reveals distinct adaptations in PINK1 and LRRK2 models of Parkinson disease
By onAutophagy is crucial for neuronal health. Studies on PD mouse models show adaptive pathways are activated to maintain brain balance, despite reduced autophagic flux in PINK1-/- mice and impaired autophagosomal function in LRRK2G2019S mice.
Wire Hang Test
By onThis behavioral test is designed to assess early motor deficits associated with muscle and grip strength.
Bone Marrow Derived Macrophage (BMDM) differentiation and maintenance
By onThis protocol describes the isolation of bone marrow derived macrophages.
Structural basis for ATG9A recruitment to the ULK1 complex in mitophagy initiation
By onHere, the authors examine the structural interaction between ATG9A and components of the ULK1 complex to better understand the process of the PINK1- and Parkin- dependent mitophagy pathway implicated in Parkinson's disease.
Immunocytochemical analysis
By onAssociated with preprint: https://www.biorxiv.org/content/10.1101/2022.11.02.514817v1
Reconstitution of LRRK2 membrane recruitment onto planar lipid bilayers
By onA method to monitor the recruitment of purified LRRK2 kinase onto planar lipid bilayers containing lipid-anchored Rab10 protein using Total Internal Reflection Fluorescence (TIRF) Microscopy.
Large-scale biophysically detailed model of somatosensory thalamocortical circuits in NetPyNE
By onThe work provides a widely accessible, data-driven and biophysically-detailed model of the somatosensory thalamocortical circuits that can be utilized as a community tool for researchers to study neural dynamics, function and disease.
Primary data associated with doi: 10.1042/BCJ20220308 (PKC isoforms activate LRRK1 kinase by phosphorylating conserved residues (Ser1064, Ser1074 and Thr1075) within the CORB GTPase domain)
By onRaw immunoblotting data; immunofluorescence microscopy images; tabular data for quantification; autoradiograph films; scans of Coomassie-stained protein gels; Prism files with statistical analysis.
Rab29-dependent asymmetrical activation of leucine-rich repeat kinase 2
By onThis study reports the cryo-EM structure of LRRK2-Rab29 complexes and provides rationale for LRRK2 membrane recruitment and activation.
Alpha-synuclein immunochemistry on STC-1 cells using DAB
By onThis protocol describes how to visualise alpha-synuclein in STC-1 cells by DAB immunohistochemistry. It also works for other antibodies (e.g. 5-HT, CCK, GLP).
LRRK2 phosphorylation of Rab GTPases in Parkinson’s disease
By onReview: This paper highlights new findings related to LRRK2-mediated phosphorylation of Rab GTPases and their consequences.
Cell viability assessment
By onThis is the protocol for assessing cell viability using a MTS cell proliferation assay kit.
Oncogenic BRAF V600E induces glial proliferation through ERK and neuronal death through JNK
By onActivating V600E in v-Raf murine sarcoma viral oncogene homolog B (BRAF) is a common driver mutation in cancers of multiple tissue origins, including melanoma and glioma. BRAFV600E has also been implicated in neurodegeneration. The present study aims to characterize BRAFV600E during cell death and proliferation of three major cell types of the central nervous system: neurons, astrocytes, and microglia. Multiple primary cultures (primary cortical mixed culture) and cell lines of glial cells (BV2) and neurons (SH-SY5Y) were employed. BRAFV600E and BRAFWT expression was mediated by lentivirus or retrovirus. Blockage of downstream effectors (extracellular signal-regulated kinase 1/2 and JNK1/2) were achieved by siRNA. In astrocytes and microglia, BRAFV600E induces cell proliferation, and the proliferative effect in microglia is mediated by activated extracellular signal-regulated kinase, but not c-Jun N-terminal kinase. Conditioned medium from BRAFV600E-expressing microglia induced neuronal death. In neuronal cells, BRAFV600E directly induces neuronal death, through c-Jun N-terminal kinase but not extracellular signal-regulated kinase. We further show that BRAF-related genes are enriched in pathways in patients with Parkinson's disease. Our study identifies distinct consequences mediated by distinct downstream effectors in dividing glial cells and in neurons following the same BRAF mutational activation and a causal link between BRAF-activated microglia and neuronal cell death that does not require physical proximity. It provides insight into a possibly important role of BRAF in neurodegeneration as a result of either dysregulated BRAF in neurons or its impact on glial cells.
Protocol for Image processing and analysis of VPS13D recruitment to mitochondria
By onThis protocol details the image processing and analysis of VPS13D recruitment to mitochondria as it was performed in https://doi.org/10.1083/jcb.202010004. The first part details the analysis of acute optogenetic recruitment, and the second part of basal recruitment under different conditions.
Structural conversion of α-synuclein at the mitochondria induces neuronal toxicity
By onOur study highlights intracellular conformational changes as a mechanism of de novo α-Syn oligomerization at mitochondrial membranes and subsequent neuronal toxicity, also observed in iPSC-derived neurons with A53T mutations from patients with PD.
HeLa culture, transfection, and labeling of Halo-fusion proteins
By onProtocol for HeLa culture, transfection, and labelling of Halo-fusion proteins.
Single-cell transcriptomic and proteomic analysis of Parkinson’s disease Brains
By onThis article established a single-nucleus transcriptomic profile of the prefrontal cortex from postmortem human brains of six patients with PD and six age-matched controls.
Surgical procedures for simultaneous optogenetic manipulation in the SNc and acute fiber photometry in the dorsal striatum
By onThis protocol describes the three surgical procedures required for simultaneous optogenetic stimulation in the Substantia Nigra pars compacta (SNc) and acute fiber photometry in the dorsal striatum.
pCAG-OSF-ATG13 (2-197)-R153D
By onPlasmid: Expresses human ATG13 HORMA R153D mutant in mammalian cells.