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  • From Policy to Practice: Tracking an Open Science Funding Initiative

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    By normalizing the open science and compliance process across funding bodies, ASAP hopes to simplify and streamline researcher, institutional, and funder workflows, allowing researchers to focus on science.

  • Immunoblotting analysis of samples from GolgiTAG (TMEM115-3HA) immunoprecipitation

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    An immunoblotting method to assess efficient enrichment of Golgi proteins in Golgi immunoprecipitation products compared to whole cell lysates, and the purity of the immunoprecipitated Golgi by monitoring the expression of other organelles’ markers.

  • Cell lysis and gel electrophoresis for protein analysis of HeLa cells

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    The authors present multiple protocols used for biochemical analysis of protein expression and association. T

  • Single cell transcriptomics from DAT-Cre mouse gut tissue

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    Colonic myenteric cells were dissociated, and live tdTomato-positive cells were FACS-collected. Colons were isolated from 2 male and female wild type adult DAT-Cre mice. Wild type C57Bl6/J was used as control for gating. Cells were processed according to 10X Genomics Chromium single cell 3' Reagent guidelines.

  • Native-PAGE analysis of VCP hexamer

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    This protocol is associated with the following preprint, published on February 19th 2022: The AAA+ chaperone VCP disaggregates Tau fibrils and generates aggregate seeds Itika Saha, Patricia Yuste-Checa, Miguel Da Silva Padilha, Qiang Guo, Roman Körner, Hauke Holthusen, Victoria A. Trinkaus, Irina Dudanova, Rubén Fernández-Busnadiego, Wolfgang Baumeister, David W. Sanders, Saurabh Gautam, Marc I. Diamond, F. Ulrich Hartl, Mark S. Hipp bioRxiv 2022.02.18.481043; doi: https://doi.org/10.1101/2022.02.18.481043

  • pHAGE-APEX2-FLAG-GABARAPL2

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    Plasmid

  • Immunological detection of APP and proteins of the endolysosomal system

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    This protocol describes the immunological detection of APP and proteins of the endolysosomal system.Here we present a general protocol for immunological detection by Western blotting of APP and proteins of the endolysosomal system, including EEA1, RAB5, PSEN1, LAMP1, LAMP2, TMEM192, and BACE1.  

  • Standard Operating Procedure: Vibratomes

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    SOP outlines safe usage of vibratomes for cutting tissue samples.

  • Maintenance and inactivation of mouse embryonic fibroblasts (MEFs) as feeder cells for human pluripotent stem cell culture

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    This collection describes the maintenance and inactivation of mouse embryonic fibroblasts (MEFs) as feeder cells for human pluripotent stem cell (hPSC) culture.

  • Membrane Tube Assay

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    This protocol details about the Membrane Tube Assay.

  • pCAG-MBP-ATG9-V839A

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    Plasmid: Expresses human ATG9-V839A mutant in mammalian cells.

  • His-ATG3-Y210A

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    Plasmid for ATG3 Y210A mutant overexpression in E.Coli.

  • Therapeutic Potential of PTB Inhibition Through Converting Glial Cells to Neurons in the Brain

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    Cell replacement therapy represents a promising approach for treating neurodegenerative diseases. Contrary to the common addition strategy to generate new neurons from glia by overexpressing a lineage-specific transcription factor(s), a recent study introduced a subtraction strategy by depleting a single RNA-binding protein, Ptbp1, to convert astroglia to neurons not only in vitro but also in the brain. Given its simplicity, multiple groups have attempted to validate and extend this attractive approach but have met with difficulty in lineage tracing newly induced neurons from mature astrocytes, raising the possibility of neuronal leakage as an alternative explanation for apparent astrocyte-to-neuron conversion. This review focuses on the debate over this critical issue. Importantly, multiple lines of evidence suggest that Ptbp1 depletion can convert a selective subpopulation of glial cells into neurons and, via this and other mechanisms, reverse deficits in a Parkinson's disease model, emphasizing the importance of future efforts in exploring this therapeutic strategy.

  • pHAGE-eGFP-TAX1BP1 Q770 E774K

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    Plasmid

  • Sectioning of Mouse Brain by Cryostat

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    This protocol describes how to use the cryostat to prepare and slice mouse brain sections for Immunohistochemistry.

  • pHAGE-eGFP-TAX1BP1 632-639Δ

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    Plasmid

  • In vivo reduction of age-dependent neuromelanin accumulation mitigates features of Parkinson’s disease

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    Humanized rodents with neuromelanin can develop Parkinson's symptoms. Reducing neuromelanin accumulation mitigates PD features, showing a link between NM levels and disease pathology.

  • H9 ES AAVS1-NGN2 FAM134C/A/B-/-

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    ES cells modified using CRISPR/Cas9 to lack ER-phagy receptor FAM134C, A & B. Introduced NEUROG2 gene in AAVS1 locus. Derived from human embryonic stem cells at blastocyst stage.

  • The impact of MG149, a KAT8 inhibitor, on mitophagy: cell-based in vitro assays

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    Protocol outlines in vitro assays (TMRM, mitoKeima) for evaluating MG149 and KAT8 inhibition effects on mitophagy.

  • Assessing enrichment of proteins in the mitochondrial fraction in HEK cells

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    This is a method for measuring protein enrichment on mitochondria in various conditions. In the resulting Western blot, one can assess the level of contamination of other organelles in the enrichment prep.

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Aligning Science Across Parkinson's
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