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Copica, an open-source easy-to-use protein copy number mass spectrometry database
onAdvances in mass spectrometry allow profiling proteome with 10 ng material. Copica database aids in analyzing and comparing protein abundance in cells and tissues, highlighting specific proteins and enabling easy comparison of datasets.
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CURTAIN, A WEB-BASED TOOL FOR DATA VISUALIZATION AND EXPLORATION OF MASS SPECTROMETRY-BASED PROTEOMICS
onCurtain is a tool for sharing, visualizing, and analyzing mass spectrometry data, designed for non-experts. It allows easy data sharing via web links and displays differential analysis results in interactive plots.
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CURTAIN-PTM, A WEB-BASED TOOL FOR DATA VISUALIZATION AND EXPLORATION OF MASS SPECTROMETRY-BASED PROTEOMICS (POST TRANSLATIONAL MODIFICATIONS)
onCurtain is a tool for sharing, visualizing, and analyzing proteomic and PTM MS data. It allows easy sharing of data via web link, displays results in interactive plots, and enables analysis of protein groups and structure. Free and open-source.
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Cactus
onCactus (10.5281/zenodo.7351087) manages session data for curtain and curtainptm backends, handling saving and loading operations efficiently.
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CXCL1 supplementation on iPSC-Derived Midbrain Neurons
onThe protocol studies the impact of different levels of recombinant human CXCL1 on midbrain neurons from iPSCs using conditioned media from ATP13A2WT astrocytes.
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Bulk RNA-seq Protocol for Astrocytes
onProtocol for RNA extraction from astrocytes for bulk RNA sequencing to analyze gene expression profiles.
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SAM ELISA
onProtocol for preparing cell lysates and conducting ELISA to quantify proteins is outlined.
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Fluorescently labeled polyamine uptake (via confocal microscopy)
onMethod visualizes polyamine uptake in cells with fluorescently labeled polyamines & confocal microscopy.
