Collection of command-line Python-based scripts for voxel-wise computation
Output Details
Description
## Description
[](https://github.com/lsoustelle/qMT#description)
A collection of command-line Python-based scripts for voxel-wise computation of:
- Joint T1,f & Macromolecular Proton Fraction (MPF) maps using a Variable Flip Angle (VFA) & a single {MTw/MT0} protocol [1] (*fit_JSPqMT_CLI.py*; "Joint Single-Point qMT"). On-resonance macromolecular saturation can be modeled by the Generalized Bloch model (linear approximation R2s,l) [2] or a super-Lorentzian with a residual broadening term [1,3] (default).
- T1 maps using the Variable Flip Angle method [4] (*fit_VFA_CLI.py*).
- MPF maps using the original Single-Point MPF method [5] (*fit_SPqMT_CLI.py*).
- MTsat maps as described in [6] (*fit_MTsat_CLI.py*).
