Long-read RNA seq analysis using Talon
Output Details
Description
This is a snakemake pipeline that takes Oxford Nanopore Sequencing (ONT) data (fastq) as input, generates fastq stats using nanostat, performs fastq processing and filtering using pychopper, map the reads to the genome using minimap2 and uses talon to assemble and quantify transcripts. It is forked from ANNSeq. Below is the dag of the pipeline
