Scripts for snRNAseq data analysis

By Oliver Tam, PhD and Molly Gale Hammell, PhD
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Output Details

Description
These are the scripts used in data analysis for ASAP CRN dataset, "Single nuclei sequencing of brain regions from healthy and Parkinson's Disease individuals", from Team Jakobsson. It comprises two sets of information: - Shell script to generate a Cell Ranger compatible reference database containing transposable element annotations - YAML file containing software, database and parameters used for the Cell Ranger count runs to generate the snRNA count matrices
Tags
  • 10X Genomics
  • Post-mortem brain tissues
  • snRNA-seq (Single-nuclear RNA-seq)
Team
Team Jakobsson
Program
Collaborative Research Network
Theme
Neuro-Immune Interactions

Meet the Authors

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