Figure 1: Rubicon KO starvation and mitophagy HaloTag processing assay
By Emma Sherrell onFigure 1. Rubicon depletion promotes bulk autophagy and Parkin mitophagy.
Autophagosome live cell imaging
By Emma Sherrell onAutophagosome live cell imaging for quantification of PINK-PARKIN mitophagy.
Plasmid construction – A RAB7A Phosphoswitch coordinates Rubicon homology protein regulation of Parkin-dependent mitophagy
By Emma Sherrell onPlasmid construction via restriction enzyme digest and ligation.
Western blotting for Rubicon and Pacer expression
By Emma Sherrell onTraditional Western blotting technique.
Tissue culture of HeLa cells
By Emma Sherrell onGrowth in DMEM supplemented with FBS and antibiotics.
Figure S2. pS72 Rab7 formation following depolarization, starvation, and iron chelation [FINAL]
By Emma Sherrell onFigure S2. pS72 Rab7 formation following depolarization, starvation, and iron chelation.
Reward perseveration is shaped by GABAA-mediated dopamine pauses
By Emma Sherrell onExtinction learning is an essential form of cognitive flexibility, which enables obsolete reward associations to be discarded. Here, the team examines the causal relationship of circuit elements to extinction and preservation.
Isolation of lysosomes using the Tagless LysoIP method in PBMCs
By Emma Sherrell onThe authors describe their method to isolate peripheral blood mononuclear cells (PBMCs) and perform rapid isolation of intact, tag-less lysosomes from PBMC homogenates using ball-bearing cell breakers and anti-TMEM192 -antibody coupled to magnetic beads.
Generation of stable LysoTag expressing cell lines and LysoTag immunoprecipitation of lysosomes
By Emma Sherrell onThis protocol can be used to immunoprecipitate lysosomes from commonly cultured cells such as mouse embryonic fibroblast, HEK293, and A549 cells expressing the LysoTag.
Code for extracting FSCV spikes
By Emma Sherrell onCode for extracting FSCV spikes used in Amjad et al. 2024.
FSCV and Ephys recording setup
By Emma Sherrell onMethods detailing the recording setup using both electrophysiological (Ephys) and fast-scan cyclic voltammetry (FSCV) are described.
Preparation of human iPSC-derived cortical neuronal progenitors for transplantation into the rodent brain
By Emma Sherrell onThis protocol describes how the authors prepare human iPSC-derived cells, that have been differentiated into cortical neuronal progenitors, for transplantation into the brain of immunocompromised athymic mice. Neuronal progenitors mature within the mouse brain and are used to study the pathogenesis of Parkinson’s disease.
Embryonic/Postnatal mouse neuron culture protocol
By Emma Sherrell onThis protocol details the primary neuron culture procedures from embryonic and postnatal mice.
Gradient-index (GRIN) lens implantation surgery in non-human primates
By Emma Sherrell onThese procedures are done in the context of calcium imaging experiments in non-human primates. The authors inject a solution containing AAV-GCaMP6 into the supplementary motor area (SMA) of the animal to be tested and then insert the GRIN lens into the injected area during the same session.
Figure S4: MW weight of gels [FINAL]
By Emma Sherrell onFigure S4. MW verification of HaloTag flux reporters.
Figure S3: Immunofluorescence of mitochondria alongside LC3B [FINAL]
By Emma Sherrell onFigure S3. Immunofluorescence of mitochondria alongside LC3B.
Reach-related single unit activity in the Parkinsonian macaque
By Emma Sherrell onThis dataset contains recordings of single-unit activity from multiple brain areas, including globus pallidus-internus (GPi), ventrolateral nucleus of the thalamus (VLa and VLp), and the arm-related regions of the primary motor cortex, including sulcus (M1-S) and gyrus (M1-G) subregions, in monkeys performing a choice reaction time reaching task.
Automated spike sorter utilizing the super paramagnetic clustering algorithm
By Emma Sherrell onTomSort is an automated spike sorter utilizing the super paramagnetic clustering (SPC) algorithm.