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  • Web portal (shiney ap) for analysis of total proteomes in response to nutrient stress

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    Web portal (shiney app) for analysis of total proteomes in response to nutrient stress Associated with preprint: https://doi.org/10.1101/2022.12.06.519342

  • UniProtExtractR

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    UniProtKB is a publicly accessible database of annotated protein features for numerous organisms; however, globally extracting protein entry information for data visualization and categorization can be challenging. While the UniProtKB entry syntax maintains database consistency, it simultaneously obscures key terms within long character strings. To increase accessibility, UniProtExtractR is both an app and R package that extracts desired information across nine UniProtKB categories: DNA binding, Pathway, Transmembrane, Signal peptide, Protein families, Domain , Motif, Involvement in disease, and Subcellular location . The app features interactive frequency tables that globally summarize both the original UniProtKB input query as well as the extracted/changed entry values. Moreover, UniProtExtractR includes a tractable mapping algorithm to define custom organelle-level resolution. UniProtExtractR exists as a freely accessible Shiny app that requires no coding experience as well as R package, the code of which is entirely open source.

  • RNAseq FASTQ: Effect of age and trisomy on transcriptional profile in cortex of Dp16 mice

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    Cortex was isolated from control and Dp16 mice at 5 months of age and 14-16 months of age, and RNA was isolated and sequenced (5 mice per group, for a total of 20 mice). The sample IDs are as follows: AJ1-AJ5: 2N young AJ6-AJ10 2N old AJ11-AJ15 Dp16 young AJ16-AJ20 Dp16 old

  • Task data for plotting interspike intervals (ISI) and spikes from fast-scan cyclic voltammetric (FSCV) electrochemical and electrophysiological recordings

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    Data includes interspike intervals (ISI) and spikes from fast-scan cyclic voltammetric (FSCV) electrochemical (EChem) and electrophysiological (EPhys) recordings for plotting.

  • Dopabase

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    Online tool for the exploration of snRNA sequencing dataset of dopamine neurons.

  • SoCal Kinesia and Incentivization for Parkinson’s Disase (SKIP)

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    SKIP is a repository merging task-based and resting-state fMRI datasets for research on human movement and incentivization, focusing on Parkinson's Disease.

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