Catalog

ASAP is committed to accelerating the pace of discovery and informing a path to a cure for Parkinson’s disease through collaboration, research-enabling resources, and data sharing. We’ve created this catalog to showcase the research outputs and tools developed by ASAP-funded programs.

Code

Probedesign pipeline for the inhouse generation of seqFISH probes

The probe design pipeline works by inputting the transcript id’s for which probes have to be designed. Additional probe design parameters such as GC% or melting temperature can be changed via the config file. The pipeline will output the designed probes in fasta format and a csv file with the results of all filtering steps.

Protocol

HyDrop-ATAC v1.0

Step-by-step protocol for execution of HyDrop-ATAC.

Protocol

HyDrop-RNA v1.0

Step-by-step protocol for performing HyDrop-RNA. The duration of each step assumes an experienced protocol user. For a first-time user, we recommend doubling the expected time for each step.

Protocol

HyDrop Bead Generation & PCR Barcoding v1.0

Protocol for producing dissolvable barcoded hydrogel beads used in HyDrop experiments.

Protocol

Microfluidic Chip Production v1.1 V.2

Protocol for producing microfluidic chips used in HyDrop experiment.